Parvarchaeota
| Parvarchaeota | |
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| Parvarchaeum acidiphilum | |
| Scientific classification | |
| Domain: | |
| Kingdom: | |
| Superphylum: | |
| Phylum: | "Parvarchaeota" Rinke et al. 2013
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| Class: | "Parvarchaeia"
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| Orders | |
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Parvarchaeota is a phylum of archaea belonging to the DPANN archaea. They have been discovered in acid mine drainage waters and later in marine sediments. The cells of these organisms are extremely small consistent with small genomes. Metagenomic techniques allow obtaining genomic sequences from non-cultured organisms, which were applied to determine this phylum.[1]
The type species is Candidatus Parvarchaeum acidiphilum. They have very small cells, around 400-500 nm, and reduced genomes made up of about 1000 genes. A similar-sized archaea that has been found in the same acidic environments is Candidatus Microarcheum, from the phylum Micrarchaeota.[1][2]
According to the phylogenetic trees Parvarchaeota may be a sister group of Thermoplasmata within Euryarchaeota[3] or belong to DPANN,[1] although it has also been suggested that all the DPANN archaea belong phylogenetically to Euryarchaeota.[3][4]
Taxonomy
[edit]The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[5] and National Center for Biotechnology Information (NCBI).[6]
- Class "Parvarchaeia"
- Order "Tiddalikarchaeales" Vazquez-Campos et al. 2021[7]
- Order "Jingweiarchaeales" Rao et al. 2023
- Family "Jingweiarchaeaceae" Rao et al. 2023
- Genus "Candidatus Jingweiarchaeum" Rao et al. 2023
- "Ca. J. tengchongense" Rao et al. 2023
- Genus "Candidatus Jingweiarchaeum" Rao et al. 2023
- Family "Jingweiarchaeaceae" Rao et al. 2023
- Order JAPDLS01
- Family "Haiyanarchaeaceae" Rao et al. 2023
- Genus "Candidatus Haiyanarchaeum" Rao et al. 2023
- "Ca. H. thermophilum" Rao et al. 2023
- Genus "Candidatus Haiyanarchaeum" Rao et al. 2023
- Family "Haiyanarchaeaceae" Rao et al. 2023
- Order "Parvarchaeales" Rinke et al. 2020[8]
- Family "Parvarchaeaceae" Rinke et al. 2020[8] ["Acidifodinimicrobiaceae" Luo et al. 2020[9]]
Phylogeny
[edit]Phylogeny of "Parvarchaeota".[11][12][13]
| "Parvarchaeia" |
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See also
[edit]References
[edit]- ^ a b c Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T (July 25, 2013). "Insights into the phylogeny and coding potential of microbial dark matter". Nature. 499, 431–437 (2013) (7459): 431–437. Bibcode:2013Natur.499..431R. doi:10.1038/nature12352. hdl:10453/27467. PMID 23851394.
{{cite journal}}: CS1 maint: multiple names: authors list (link) - ^ Brett J. Baker, Gregory J. Dick. Omic, Approaches in Microbial Ecology:Charting the Unknown Analysis of wholecommunity sequence data is unveiling the diversity and function of specific microbial groups within uncultured phyla and across entire microbial ecosystems. Academia.edu.
- ^ a b Petitjean, C.; Deschamps, P.; López-García, P.; Moreira, D. (2014). "Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota". Genome Biol. Evol. 7 (1): 191–204. doi:10.1093/gbe/evu274. PMC 4316627. PMID 25527841.
- ^ Cavalier-Smith, Thomas; Chao, Ema E-Yung (2020). "Multidomain ribosomal protein trees and the planctobacterial origin of neomura (Eukaryotes, archaebacteria)". Protoplasma. 257 (3): 621–753. doi:10.1007/s00709-019-01442-7. PMC 7203096. PMID 31900730.
- ^ J.P. Euzéby. "Parvarchaeota". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2021-06-27.
- ^ Sayers; et al. "Parvarchaeota". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20.
- ^ a b c d Vázquez-Campos, Xabier; Kinsela, Andrew S.; Bligh, Mark W.; Payne, Timothy E.; Wilkins, Marc R.; Waite, T. David (2021). "Genomic Insights Into the Archaea Inhabiting an Australian Radioactive Legacy Site". Frontiers in Microbiology. 12: 732575. doi:10.3389/fmicb.2021.732575. ISSN 1664-302X. PMC 8561730. PMID 34737728.
- ^ a b Rinke, Christian; Chuvochina, Maria; Mussig, Aaron J.; Chaumeil, Pierre-Alain; Davin, Adrian A.; Waite, David W.; Whitman, William B.; Parks, Donovan H.; Hugenholtz, Philip (2021-02-17). "Resolving widespread incomplete and uneven archaeal classifications based on a rank-normalized genome-based taxonomy". Nature Microbiology. 6 (7): 946–959. bioRxiv 10.1101/2020.03.01.972265. doi:10.1038/s41564-021-00918-8. PMID 34155373. S2CID 231984712.
- ^ a b c Luo, Zhen-Hao; Li, Qi; Lai, Yan; Chen, Hao; Liao, Bin; Huang, Li-nan (2020). "Diversity and Genomic Characterization of a Novel Parvarchaeota Family in Acid Mine Drainage Sediments". Frontiers in Microbiology. 11: 612257. doi:10.3389/fmicb.2020.612257. ISSN 1664-302X. PMC 7779479. PMID 33408709.
- ^ a b c Baker, Brett J.; Comolli, Luis R.; Dick, Gregory J.; Hauser, Loren J.; Hyatt, Doug; Dill, Brian D.; Land, Miriam L.; VerBerkmoes, Nathan C.; Hettich, Robert L.; Banfield, Jillian F. (2010-05-11). "Enigmatic, ultrasmall, uncultivated Archaea". Proceedings of the National Academy of Sciences. 107 (19): 8806–8811. Bibcode:2010PNAS..107.8806B. doi:10.1073/pnas.0914470107. ISSN 0027-8424. PMC 2889320. PMID 20421484.
- ^ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ "ar53_r220.sp_label". Genome Taxonomy Database. Retrieved 10 May 2024.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.