User:Jts1882/sandbox/test/Phylogeny

Classification of life standard (Ruggieri et al 2016)

The classification of life is a heirarchical organisation of the more than 1.6 million species that have been characterised and listed in the Catalogue of Life (CoL).

Listing

| section = section

Eukarotes

Some good trees:

• SAR_supergroup#Phylogeny (Harosa)
  • Heterokont#Phylogeny
    • Brown_algae#Phylogeny
  • Rhizaria#Phylogeny
  • Alveolate#Phylogeny]

Missing: Excavata

Plants

• Archaeplastida#Taxonomy (general scheme)
  • no decent trees for Rhodaphyta and Glaucaphyta
  • Chlorophyta#Phylogeny
  • Green_algae#Evolution_and_classification (Viridiplantae)
    • Prasinophyceae#Phylogeny
  • Embryophyte#Phylogeny_and_classification
    • Marchantiophyta#Internal_classification (liverworts)
    • Moss#Classification (bryophyta)
    • Hornwort#Phylogeny
    • Polysporangiophyte#Phylogeny
    • Vascular_plant#Phylogeny (vascular plants)
      • Spermatophyte#Relationships_and_nomenclature
      • Flowering_plant#APG_IV_classification

Animals

Fish

Some cladograms of fishes on wikipedia:

• Gnathostomata

• Evolution_of_fish#Jawless_fish
• Evolution_of_fish#Jawed_fish
  • Chondrichthyes#Phylogeny (not clade diagram; Palaeos?)
  • Osteichthyes#Phylogeny(bony fish)
    • Actinopterygii#Classification (ray-finned fish]]
      • Teleost#Evolution_and_phylogeny
        • Neoteleostei
        • Acanthopterygii#Phylogeny
        • Percomorpha#Evolution

• • • Sarcopterygii#Phylogeny (lobe-finned fish)

Subphylum Vertebrata
└─Infraphylum Gnathostomata
      ├─Placodermi — extinct (armored gnathostomes)
      └Eugnathostomata (true jawed vertebrates)
         ├─Acanthodii (stem cartilaginous fish)
         └─Chondrichthyes (true cartilaginous fish)
             ├─Holocephali (chimaeras + several extinct clades)
             └Elasmobranchii (shark and rays)
                ├─Selachii (true sharks)
                └─Batoidea (rays and relatives)

Gnathostomata	†Placodermi (armored gnathostomes) Eugnathostomata Acanthodii (stem cartilaginous fish) Chondrichthyes Holocephali (chimaeras + several extinct clades) Elasmobranchii Selachii (true sharks) Batoidea (rays and relatives)  (shark and rays)   (true cartilaginous fish)   (true jawed vertebrates)
(jawed vertebrates)

Reptiles

Reptile cladograms on wikipedia:

• Reptile#Phylogeny (scheme including main extinct groups)(illustrated); could separate crown reptiles)
  • Sauropterygia#Classification (two reptile classifications,
    • one with testudines basal and a large clade of extinct marine reptiles (including ichthyosaurs and sauropterans) as sister to the rest of extant reptiles (lepido- and archo-sauromorpha)
    • a second showing an arrange with the testudines repositioned in Archosauromorpha after Lee 2013
  • Ichthyopterygia#Phylogeny (ichthyosaurs based on Cuthbertson et al., 2013; could be combined with above to give both main branches)
  • Placodontiformes#Phylogeny
  • Plesiosauria#Relationships
  • Pistosauria
  • Archosauromorpha#Classification (two arrangements)
  • Pantestudinata(two schemes, placed within Archo- and lepido-sauromorpha, respectively) for withinTestudinata (extinct forms to genus level)
  • Parareptilia#History of classification (three schemes)
  • others in Diapsid, Neodiapsid with lots of redundancy (use templates)
  • Sauropsida#Phylogeny (again supposedly based on Lee 2013)
  • Archosauriformes#Relationships (two schemes, including a detailed one that links to non-expanded sections]]

Extant reptiles

• • Suchia#Phylogeny (two trees)

• Squamata#Classification (this is a good example that can be broken up into templates and then the other phylogeny articles can also get the trees transcluded).
  • Iguania#Phylogeny
  • Snake#Evolution
• Turtles#Phylogeny of living turtles
• Rhynchocephalia#Classification (tuataras and extinct relatives)
• Crocodilia#Relationships (to Genus)

Mammals

• Synapsid#Evolutionary_history (early mammals and extinct relatives)

Xenarthra

Xenarthra	Cingulata Dasypodidae †Pampatheriidae Chlamyphoridae Pilosa Vermilingua Cyclopedidae Myrmecophagidae Folivora †Megatheriidae †Nothrotheriidae Bradypodidae †Mylodontidae Megalonychidae

Afrotheria

Afrotheria	Afroinsectiphilia Tubulidentata Orycteropodidae Afroinsectivora Macroscelidea Macroscelididae Afrosoricida Chrysochloridae Tenrecidae Paenungulata Hyracoidea Procaviidae Tethytheria Proboscidea Elephantidae Sirenia Dugongidae Trichechidae

Laurasiatheria

Boreoeutheria

Euarchontoglires  (primates, colugos, treeshrews, rodents, rabbits)   Laurasiatheria   Eulipotyphla  (hedgehogs, shrews, moles, solenodons)   Scrotifera   Chiroptera  (bats and flying foxes)   Ferungulata   Ferae   Pholidota  (pangolins)   Carnivora  (cats, hyenas, dogs, bears, seals, etc.)   Euungulata   Perissodactyla   (horses, tapirs, rhinos, etc.)  Cetartiodactyla  (camels, pigs, ruminants, hippos, whales, etc.)

Boreoeutheria	Laurasiatheria     Eulipotyphla    Scrotifera     Chiroptera    Fereuungulata       Ferae     Pholidota  Carnivora    Euungulata     Perissodactyla        Artiodactyla     Tylopoda    Artiofabula     Suina        Cetruminantia     Ruminantia    Whippomorpha     Hippopotamidae  Cetacea  Euarchontoglires

Cetartiodactyla (includes even-toed ungulates (Artiodactyla) and Cetacea (whales and dolphins))

Ungulata

Ungulata

Perissodactyla Equidae Tapiridae Rhinocerotidae Artiodactyla Tylopoda Camelidae Artiofabula Suina Tayassuidae Suidae Cetruminantia Whippomorpha Hippopotamidae Cetacea Mysticeti Balaenidae Cetotheriidae Eschrichtiidae Balaenopteridae Odontoceti Kogiidae Physeteridae Platanistidae Ziphiidae †Lipotidae Pontoporiidae Iniidae Delphinidae Monodontidae Phocoenidae Ruminantia Tragulidae Antilocapridae Giraffidae Cervidae Moschidae Bovidae

Felidae

Molecular phylogenetic analysis suggests that living (extant) felids fall into eight lineages (clades).

The eight lineages divide between these as follows:

• Subfamily Pantherinae:
  • Lineage 1 (Panthera lineage): Panthera, Neofelis
• Subfamily Felinae:
  • Lineage 2 (Bay cat lineage): Pardofelis, Catopuma
  • Lineage 3 (Caracal lineage): Leptailurus, Caracal (including Profelis)
  • Lineage 4 (Ocelot cat lineage): Leopardus
  • Lineage 5 (Lynx lineage): Lynx
  • Lineage 6 (Puma lineage): Puma, Acinonyx
  • Lineage 7 (Leopard cat lineage): Prionailurus, Otocolobus
  • Lineage 8 (Domestic cat lineage): Felis

In 2006, Johnson et al. presented the following cladogram (the genera shown are those included in the analysis):

Felidae	Panthera lineage Neofelis (clouded leopard) Panthera Bay cat lineage Pardofelis Caracal lineage Caracal Ocelot lineage Leopardus Lynx lineage Lynx Puma lineage Acinonyx (cheetah) Puma Leopard cat lineage Otocolobus Prionailurus Domestic cat lineage Felis